PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008350.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 474aa    MW: 52243.8 Da    PI: 6.3842
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008350.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.14.7e-26146210170
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                  r+++sL+llt++f++l++++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwk
  CCG008350.3 146 RYDSSLGLLTKRFVDLFKNAHDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWK 210
                  6899******************************...99..****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-27143210IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.1E-33146211IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.39E-17146209IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.3E-23148210IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.14E-30244347No hitNo description
PfamPF164215.8E-32246345IPR032198E2F transcription factor, CC-MB domain
CDDcd146608.48E-47246347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSGGAKASPR PAATAPPSGP ILPPLARHLA FATMKPPFLP PDDYHRFSSP STSRVAADRD  60
AEAIVVRSPK LKRKSGLADN GVSSSNHVSS PGCINISNSP FRTPASAKGG RAHNNSKTSK  120
GNGAGPQTPV SKADCSSPLT PAGSCRYDSS LGLLTKRFVD LFKNAHDGIL DLNNAAETLE  180
VQKRRIYDIT NVLEGIGLIE KTLKNRIRWK HPKHMGTRIG INLIEWLTRG IDASRPRQVE  240
GDATLLQEEI EKLTMEEHKL DDQIREMQER LRDMSEQENN QKWLFVTEED IKSLPCFLNE  300
TLIAIKAPHG TTLEVLDPDE AVDCQQRRYR IILRSSMGPI DVYLVSQFEE MNSVDASAFP  360
HASSSASHGN PVTEMTTGVR TEKRADPLAQ QVPTTFSDPN ATQDLGGMMK IVPSDINNDS  420
DYWLLSDADI SITDMWKTDC GSFFGFYALL EPDTELVRNY GGETRKQAFE YHPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-21141210272PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044036.10.0PREDICTED: transcription factor E2FA-like isoform X3
SwissprotQ9FNY01e-145E2FA_ARATH; Transcription factor E2FA
TrEMBLB9IIN50.0B9IIN5_POPTR; E2F TRANSCRIPTION FACTOR-3 family protein
STRINGPOPTR_0016s07310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-143E2F transcription factor 3